Избранные публикации
Эффект супрессии полимеразной цепной реакции и методы на его основе
- Buzdin A, Lukyanov S. Stem-loop oligonucleotides as hybridization probes and their practical use in molecular biology and biomedicine. In: Nucleic Acids Hybridization: Modern Applications. Buzdin, Anton; Lukyanov, Sergey (Eds.) XX, 316 p., Hardcover ISBN: 978-1-4020-6039-7, 2007; 85-96
- Lukyanov S, Rebrikov D, Buzdin A. Suppression subtractive hybridization. In: Nucleic Acids Hybridization: Modern Applications. Buzdin, Anton; Lukyanov, Sergey (Eds.) XX, 316 p., Hardcover ISBN: 978-1-4020-6039-7, 2007; 53-84
- Lukyanov S, Lukyanov K, Gurskaya N, Bogdanova E, Buzdin. A. Selective suppression of polymerase chain reaction and its most popular applications. In: Nucleic Acids Hybridization: Modern Applications. Buzdin, Anton; Lukyanov, Sergey (Eds.) XX, 316 p., Hardcover ISBN: 978-1-4020-6039-7, 2007; 29-51
- Rebrikov DV, Desai SM, Siebert PD, Lukyanov SA. Suppression subtractive hybridization. Methods Mol Biol. 2004;258:107-34; PMID: 14970460
- Matz MV, Alieva NO, Chenchik A, Lukyanov S. Amplification of cDNA ends using PCR suppression effect and step-out PCR. Methods Mol.Biol. 2003, 221:41-49; PMID: 12703732
- Rebrikov DV, Britanova OV, Gurskaya NG, Lukyanov KA, Tarabykin VS, Lukyanov SA. Mirror orientation selection (MOS): a method for eliminating false positive clones from libraries generated by suppression subtractive hybridization. Nucleic Acids Res. 2000, 15;28(20):E90; PMID: 11024192
- Diatchenko L., Lukyanov S., Lau Y.-F.C., Siebert P.D. Suppression subtractive hybridization: a versatile method for identifying differentially expressed genes. Method Enzym., 1999, V. 303, 349-380; PMID: 10349654
- Shagin D.,Lukyanov K.A., Vagner L.L., Matz M.V. Regulation of average length of complex PCR product. Nucleic Acids Research 1999, V. 27, N 18, e23; PMID: 10471753
- Matz M., Shagin D., Bogdanova E., Lukyanov S., Diatchenko L., and Chenchik A. Amplification of cDNA ends based on template-switching effect and step-out PCR. Nucleic Acids Research, 1999, V. 27, 1558-1560; PMID: 10037822
- Akopyans N.S., Fradkov A.F., Diatchenko L.B., Siebert P.D., Lukyanov S.A., Sverdlov E.D., Berg D.E. PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori. Proc. Natl. Acad. Sci. USA., 1998, V. 95, 13108-13113; PMID: 9789049
- Lukyanov K.A., Diachenko L, Chenchik A., Nanisetti A., Siebert P.D., Usman N.Y., Matz M.V., Lukyanov S.A. Construction of cDNA libraries from small amounts of total RNA using the suppression PCR effect. Biophis.Biochem.Res.Com., 1997, V. 230, 285-288; PMID: 9016767
- Lukyanov K.A., Matz M.V., Bogdanova E.A., Gurskaya N.G., Lukyanov S.A. Molecule by molecule PCR amplification of complex DNA mixtures for direct sequencing: an approach to in vitro cloning. Nucleic Acids Research, 1996, V. 24, 2194-2195; PMID: 8668555
- Diachenko, L., Lau Y.-F.C., Campbell A.P., Chenchik,A., Mogadam, F., Huang, B., Lukyanov, S., Lukyanov, K., Gurskaya, N., Sverdlov, E.D., and Siebert, D. Suppression Subtractive Hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl. Acad. Sci. USA., 1996, V. 93, 6025-6030; PMID: 8650213
- Lukyanov K.A., Launer G.A., Tarabykin V.S., Zaraisky A.G. and Lukyanov S.A. Inverted terminal repeats permit the average length of amplified DNA fragments to be regulated during preparation of cDNA libraries by polymerase chain reaction. Analytical Biochemistry, 1995, V. 229, 198-202; PMID: 7731798
- Siebert P.D., Chenchik A., Kellogg D.E., Lukyanov K.A. and Lukyanov S.A. An improved PCR method for walking in uncloned genomic DNA. Nucleic Acids Research, 1995, V. 23, 1087-1088; PMID: 7731798
- Лаунер Г.А., Лукьянов К.А., Тарабыкин В.С., Лукьянов С.А. Простой метод амплификации суммарной кДНК на основе малых количеств суммарной РНК. Молек. генетика, микробиология и вирусология. 1994, N 6, 38-41; PMID: 7537858
- Лукьянов С.А., Гурская Н.Г., Лукьянов К.А., Тарабыкин В.С., Свердлов Е.Д. Высокоэффективная вычитающая гибридизация кДНК. Биоорганическая химия. 1994, Т. 20 (6), 701-704.
Флуоресцентные белки
- Chudakov DM, Lukyanov S, Lukyanov KA. Tracking intracellular protein movements using photoswitchable fluorescent proteins PS-CFP2 and Dendra2. Nat Protoc. 2007;2(8):2024-32. PMID: 17703215
- Shcherbo D, Merzlyak EM, Chepurnykh TV, Fradkov AF, Ermakova GV, Solovieva EA, Lukyanov KA, Bogdanova EA, Zaraisky AG, Lukyanov S, Chudakov DM. Bright far-red fluorescent protein for whole-body imaging. Nat Methods. 2007 Sep;4(9):741-6. PMID: 17721542
- Souslova EA, Chudakov DM. Genetically encoded intracellular sensors based on fluorescent proteins. Biochemistry (Mosc). 2007 Jul;72(7):683-97. PMID: 17680759
- Merzlyak EM, Goedhart J, Shcherbo D, Bulina ME, Shcheglov AS, Fradkov AF, Gaintzeva A, Lukyanov KA, Lukyanov S, Gadella TW, Chudakov DM. Bright monomeric red fluorescent protein with an extended fluorescence lifetime. Nat Methods. 2007 Jul;4(7):555-7. PMID: 17572680
- Souslova EA, Belousov VV, Lock J, Stromblad S, Kasparov S, Bolshakov AP, Pinelis VG, Labas YA, Lukyanov S, Mayr LM, Chudakov DM. Single fluorescent protein-based Ca2+ sensors with increased dynamic range. BMC Biotechnol. 2007 Jun 29;7(1):37. PMID: 17603870
- Chudakov DM, Lukyanov S, Lukyanov KA. Using photoactivatable fluorescent protein Dendra2 to track protein movement. Biotechniques. 2007 May;42(5):553, 555, 557. PMID: 17515192
- Zhang L, Gurskaya NG, Merzlyak EM, Staroverov DB, Mudrik NN, Samarkina ON, Vinokurov LM, Lukyanov S, Lukyanov KA. UMethod for real-time monitoring of protein degradation at the single cell level. Biotechniques. 2007 Apr;42(4):446, 448, 450. PMID: 17489230
- Evdokimov AG, Pokross ME, Egorov NS, Zaraisky AG, Yampolsky IV, Merzlyak EM, Shkoporov AN, Sander I, Lukyanov KA, Chudakov DM. Structural basis for the fast maturation of Arthropoda green fluorescent protein. EMBO Rep. 2006 Oct;7(10):1006-12. Epub 2006 Aug 25. PMID: 16936637
- Chudakov DM, Chepurnykh TV, Belousov VV, Lukyanov S, Lukyanov KA. Fast and precise protein tracking using repeated reversible photoactivation. Traffic. 2006 Oct;7(10):1304-10. Epub 2006 Aug 2. PMID: 16889652
- Belousov VV, Fradkov AF, Lukyanov KA, Staroverov DB, Shakhbazov KS, Terskikh AV, Lukyanov S. Genetically encoded fluorescent indicator for intracellular hydrogen peroxide. Nat Methods. 2006 Apr;3(4):281-6. PMID: 16554833
- Gurskaya NG, Verkhusha VV, Shcheglov AS, Staroverov DB, Chepurnykh TV, Fradkov AF, Lukyanov S, Lukyanov KA. Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light. Nat Biotechnol. 2006 Apr;24(4):461-5. Epub 2006 Mar 19. PMID: 16550175
- Souslova EA, Chudakov DM.
Photoswitchable cyan fluorescent protein as a FRET donor. Microsc Res Tech. 2006 Mar;69(3):207-9. PMID: 16538627
- Bulina ME, Lukyanov KA, Britanova OV, Onichtchouk D, Lukyanov S, Chudakov DM. Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed. Nature Protocols. 2006;1:947-53 doi:10.1038/nprot.2006.89
- Bulina ME, Chudakov DM, Britanova OV, Yanushevich YG, Staroverov DB, Chepurnykh TV, Merzlyak EM, Shkrob MA, Lukyanov S, Lukyanov KA. A genetically encoded photosensitizer. Nat Biotechnol. 2006 Jan;24(1):95-9. Epub 2005 Dec 20; PMID: 16369538
- Lukyanov KA, Chudakov DM, Fradkov AF, Labas YA, Matz MV, Lukyanov S. Discovery and properties of GFP-like proteins from nonbioluminescent anthozoa. Methods Biochem Anal. 2006;47:121-38; PMID: 16335712
- Shkrob MA, Yanushevich YG, Chudakov DM, Gurskaya NG, Labas YA, Poponov SY, Mudrik NN, Lukyanov S, Lukyanov KA. Far-red fluorescent proteins evolved from a blue chromoprotein from Actinia equina. Biochem J. 2005 15;392(Pt 3):649-54; PMID: 16164420
- Chudakov DM, Lukyanov S, Lukyanov KA. Fluorescent proteins as a toolkit for in vivo imaging. Trends Biotechnol. 2005 Dec;23(12):605-13; PMID: 16269193
- Lukyanov KA, Chudakov DM, Lukyanov S, Verkhusha VV. Innovation: Photoactivatable fluorescent proteins. Nat Rev Mol Cell Biol. 2005 Nov;6(11):885-91; PMID: 16167053
- Chudakov DM, and Lukyanov KA. Using photoactivatable GFPs to study protein dynamics and function. In: Jorde, L.B., Little, P.F.R., Dunn, M.J. and Subramaniam, S. (Eds), Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. John Wiley & Sons Ltd: Chichester, 2005; 2129-37
- Lukyanov KA, Chudakov DM, Fradkov AF, Labas YA, Matz MV and Lukyanov SA. Discovery and properties of GFP-like proteins from non-bioluminescent Anthozoa. In: Green fluorescent protein: properties and applications. Chalfie, M., Kain, S., Eds. Willey-Liss, New York, 2005; 121-38
- Yampolsky IV, Remington SJ, Martynov VI, Potapov VK, Lukyanov S, Lukyanov KA. Synthesis and properties of the chromophore of the asFP595 chromoprotein from Anemonia sulcata. Biochemistry. 2005 Apr 19;44(15):5788-93; PMID: 15823037
- Chudakov D.M., Verkhusha V.V., Staroverov D.B., Souslova E.A., Lukyanov S., Lukyanov K.A. Photoswitchable cyan fluorescent protein for protein tracking. Nature Biotechnol., 2004, 22, 1435-1439; PMID: 15502815
- Verkhusha VV, Lukyanov KA. The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins Nature Biotechnol, 2004 Mar;22(3):289-96; PMID: 14990950
- Shagin DA., Barsova EV., Yanushevich YG., Fradkov AF., Lukyanov KA., Labas YA., Ugalde JA., Meyer A., Nunes JM.,. Widder EA., Lukyanov SA. and Matz MV. GFP-like proteins as ubiquitous Metazoan superfamily: evolution of functional features and structural complexity. Mol.Biol.Evol., 2004 21(5):841-50; PMID: 14963095
- Verkhusha VV, Chudakov DM, Gurskaya NG, Lukyanov S, Lukyanov KA. Common pathway for the red chromophore formation in fluorescent proteins and chromoproteins. Chem Biol. 2004 Jun;11(6):845-54; PMID: 15217617
- Чудаков Д.М., Лукьянов К.А. Использование зеленого флуоресцентного белка (GFP) и его гомологов для изучения подвижности белков in vivo Биохимия, 2003, 68 (9):952-957; PMID: 14606935
- Chudakov DM, Belousov VV, Zaraisky AG, Novoselov VV, Staroverov DB, Zorov DB, Lukyanov S, Lukyanov KA. Kindling fluorescent proteins - a novel tool for precise in vivo photolabeling. Nature Biotech., 2003, Feb;21(2):191-194; PMID: 12524551
- Chudakov DM, Feofanov AV, Mudrik NN, Lukyanov S, Lukyanov KA. Chromophore environment provides clue to "kindling fluorescent protein" riddle. J. Biol. Chem. 2003 Feb 28;278(9):7215-7219; PMID: 12496281
- Bulina ME, Verkhusha VV, Staroverov DB, Chudakov DM, Lukyanov KA. Hetero-oligomeric tagging diminishes non-specific aggregation of target proteins fused with Anthozoa fluorescent proteins. Biochem J 2003, Apr 1; 371:109-14; PMID: 12472468
- Gurskaya N.G., Fradkov A.F., Pounkova N.I., Staroverov D.B., Bulina M.E, Yanushevich Y.G., Labas Y.A., Lukyanov S. and Lukyanov K.A. A colourless GFP homologue from the non-fluorescent hydromedusa Aequorea coerulescens and its fluorescent mutants. Biochem. J. 2003, Jul 15; 373:403-8; PMID: 12693991
- Matz MV, Lukyanov KA and Lukyanov SA. Family of the green fluorescent protein: jorney to the end of the rainbow. Bioessays, 2002, 24(10): 953-9; PMID: 12325128
- Fradkov AF, Verkhusha VV, Staroverov DB, Bulina ME, Yanushevich YG, Martynov VI, Lukyanov S, Lukyanov KA. Far-red fluorescent tag for protein labeling. Biochem J. 2002 Nov 15;368(Pt 1):17-21; PMID: 12350221
- Labas YA, Gurskaya NG, Yanushevich YG, Fradkov AF, Lukyanov KA, Lukyanov SA, Matz MV. Diversity and evolution of the green fluorescent protein family. Proc. Natl. Acad. Sci. U S A 2002; 99(7):4256-61; PMID: 11929996
- Yanushevich YG, Staroverov DB, Savitsky AP, Fradkov AF, Gurskaya NG, Bulina ME, Lukyanov KA, Lukyanov SA. A strategy for the generation of non-aggregating mutants of Anthozoa fluorescent proteins. FEBS Lett 2002 Jan 30;511(1-3):11-4; PMID: 11821040
- Bulina M, Chudakov D, Mudrik N, Lukyanov K. Interconversion of Anthozoa GFP-like fluorescent and non-fluorescent proteins by mutagenesis. BMC Biochem 2002 Apr 24;3(1):7; PMID: 11972899
- Yarbrough D, Wachter RM, Kallio K, Matz MV, Remington SJ. Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution. Proc Natl Acad Sci U S A 2001, 98(2):462-467; PMID: 11209050
- Gurskaya NG, Fradkov AF, Terskikh A, Matz MV, Labas YA, Martynov VI, Yanushevich YG, Lukyanov KA, Lukyanov SA. GFP-like chromoproteins as a source of far-red fluorescent proteins. FEBS Lett. 2001, 507(1):16-20; PMID: 11682051
- Terskikh A, Fradkov A, Ermakova G, Zaraisky A, Tan P, Kajava AV, Zhao X, Lukyanov S, Matz M, Kim S, Weissman I, Siebert P. "Fluorescent Timer": Protein That Changes Color with Time. Science, 2000, V. 290,1585-1588 ; PMID: 11090358
- Fradkov AF, Chen Y, Ding L, Barsova EV, Matz MV, Lukyanov SA. Novel fluorescent protein from Discosoma coral and its mutants possesses a unique far-red fluorescence. FEBS Lett., 2000, 18;479(3):127-30; PMID: 10981720
- Lukyanov K.A., Fradkov A. F., Gurskaya N.G., Matz M.V., Labas Y.A., Savitsky A.P., Markelov M.L., Zaraisky A.G., Zhao X., Fang Y., Tan W., and Lukyanov S.A. Natural animal coloration can be determined by a non-fluorescent GFP homolog. J Biol Chem, 2000, V. 275, 25879-25882; PMID: 10852900
- Matz M.V, Fradkov A.F., Labas Y.A., Savitsky A.P., Zaraisky A.G., Markelov M.L., Lukyanov S.A. Fluorescent proteins from nonbioluminescent Antozoa species. Nature Biotechnology, 1999, V. 17, 969-973; PMID: 10504696
Дуплекс-специфическая нуклеаза и ее применение для нормализации кДНК
- Shcheglov A, Zhulidov P, Bogdanova E, Shagin D. Generation of normalized cDNA libraries. In: Nucleic Acids Hybridization: Modern Applications. Buzdin, Anton; Lukyanov, Sergey (Eds.) XX, 316 p., Hardcover ISBN: 978-1-4020-6039-7, 2007; 97-124
- Anisimova VE, Rebrikov DV, Zhulidov PA, Staroverov DB, Lukyanov SA, Shcheglov AS. Renaturation, activation, and practical use of recombinant duplex-specific nuclease from Kamchatka crab. Biochemistry (Mosc). 2006 May;71(5):513-9. PMID: 16732729
- Altshuler IM, Zhulidov PA, Bogdanova EA, Mudrik NN, Shagin DA.
Application of the DSNP-method for analysis of single nucleotide polymorphisms in the human genes.
Bioorg Khim. 2005;31(6):627-636 (in Russian)
- Zhulidov PA, Bogdanova EA, Shcheglov AS, Shagina IA, Wagner LL, Khazpekov GL, Kozhemyako VV, Lukyanov SA, Shagin DA.
A Method for the Preparation of Normalized cDNA Libraries Enriched with Full-Length Sequences.
Bioorg Khim. 2005;31(2):186-94 (in Russian)
- Zhulidov PA., Bogdanova EA., Shcheglov AS., Vagner LL., Khaspekov GL., Kozhemyako VB., Matz MV., Meleshkevitch E., Moroz LL,. Lukyanov SA, and Shagin DA. Simple cDNA normalization using kamchatka crab duplex-specific nuclease. Nucl. Acids. Res. 2004 32: e37. PMID: 14973331
- Shagin DA, Rebrikov DV, Kozhemyako VB, Altshuler IM, Scheglov AS, Zhulidov PA, Bogdanova EA, Staroverov DB, Rasskazov VA, Lukyanov S. A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas. Genome Res. 2002 Dec;12(12):1935-42. PMID: 12466298
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